Macromolecule Data Analysis
Most used links
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Databases and keyword searches |
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SwissProt- Database of protein sequences and related information. |
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Sequence similarity searches |
| BIC- Search and alignment- identity and similarity indexes; |
| BLAST - Search and alignment of sequences - see Help -NCBI |
| FASTA - Comparisons between sequence and database EBI |
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Searches based on amino acid composition
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| AA Analysis (PROPSEARCH) - EMBL-Heidelberg |
| AA CompIdent- ExPASy |
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Searches based on mass spectrometry
data |
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ExPaSy - Sequence tags |
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PepSea - Sequence tags |
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PepSea - Busca po seqüência |
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PepSea - Fingerprint |
| ProFound- Peptide fingerprinting - Prowl - OWL databases. |
| PepIdent- Fingerprinting |
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Mascot- Fingerprint |
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Mascot- Sequence Query |
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Mascot- Sequence tags |
| Protein Prospector - Fingerprint, Sequence Tag, theoretical cleavage and fragmentation. UCSF MS Facility |
| PROWL- Many protein mass spectrometry analysis tools Rockefeller U. |
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Peptide Search- Sequence |
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Peptide Search - Peptide fingerprinting ou sequence tags - EMBL |
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Predictions based on sequence data
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| pI/Mw - Calculates pI and molecular mass from sequence ExPASy |
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Alignments |
| CLUSTALW - Multiple sequence alignment |
| LALIGN - Calculates best alignments between two sequences - FASTA |
| DALIGN - Multiple sequence alignment |
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Other |
| ExPASy- Many links and tools for proteins |
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